species:   Clros
pid:       PID2251
parent:    cro-mir-46
paralog:   
locus:     CADEHS020000002.2:2828841-2828933
matures:   ['AUUCCCCGUAUCGGAGA', 'AGGCUGGCGAGGCGAAUC']
srr:       ERR5950930
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram CADEHS020000002.2:2828841-2828933

2604 out of bounds
373 alignments
373 proper strand
336 stranded perfect matches

 **************                                                             **************   
AUUCCCCGUAUCGGAGAUUGUGUAUGAAACAUUCUUUUUGGUCACUUUUUGAAGAUGAGCGUGCAUGCAUAAUGAGGCUGGCGAGGCGAAUCC
(((((((((..(((..((((((((((..((.(((.((((.(........).)))).))).)).))))))))))....)))))).)).))))..
AUUCCCCGUAUCGGAGA---------------------------------------------------------------------------- l=17 a=43 c
--------------------------------------------------------------------------AGGCUGGCGAGGCGAAUC- l=18 a=0 c*
---CCCCGUAUCGGA------------------------------------------------------------------------------ l=12 a=115 ma
------------------------------------------------------------------------------UGGCGAGGCGAA--- l=12 a=0 ma*

AUUCCCCGUAUCG-------------------------------------------------------------------------------- l=13 a=1 
AUUCCCCGUAUCGG------------------------------------------------------------------------------- l=14 a=2 
AUUCCCCGUAUCGGA------------------------------------------------------------------------------ l=15 a=77 
uUUCCCCGUAUCGGA------------------------------------------------------------------------------ l=15 a=1 
AUUCCCCGUAUCGGAG----------------------------------------------------------------------------- l=16 a=20 
AUUCCCCGUAUCGGAGA---------------------------------------------------------------------------- l=17 a=43 (c)
AUUCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=17 a=23 
-UUCCCCGUAUCGGA------------------------------------------------------------------------------ l=14 a=11 
-UUCCCCGUAUCGGAG----------------------------------------------------------------------------- l=15 a=3 
-UUCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=16 a=6 
--UCCCCGUAUCGG------------------------------------------------------------------------------- l=12 a=1 
--UCCCCGUAUCGGA------------------------------------------------------------------------------ l=13 a=15 
--UCCCCGUAUCGGAG----------------------------------------------------------------------------- l=14 a=10 
--UCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=15 a=3 
---CCCCGUAUCGG------------------------------------------------------------------------------- l=11 a=1 
---CCCCGUAUCGGA------------------------------------------------------------------------------ l=12 a=115 (ma)
---CCCCGUAUCGGAG----------------------------------------------------------------------------- l=13 a=19 
---CCCCGUAUCGGAGc---------------------------------------------------------------------------- l=14 a=3 
----CCCGUAUCGGA------------------------------------------------------------------------------ l=11 a=9 
----CCCGUAUCGGAG----------------------------------------------------------------------------- l=12 a=2 
-----CCGUAUCGGAG----------------------------------------------------------------------------- l=11 a=2 
----------UCGGAGAUUGUGUAaG------------------------------------------------------------------- l=16 a=1 
----------UCGGAGAUUGUGUAUG------------------------------------------------------------------- l=16 a=1 
----------------AUUGUGUAUGAAACAUU------------------------------------------------------------ l=17 a=1 
----------------AUUGUGUAUGAAACAUUCUUUUU------------------------------------------------------ l=23 a=1 
----------------------UAUGAAACAUUCUUUUUGGUC-------------------------------------------------- l=21 a=2 

mb-01011
ax-1011001
ku-11
ss-101011111100
fn-111
